Sequence
atgc intronic sequence ATGC exonic sequence...tctctatttgctaattccctggccattttctcttgtttagtatgaaatatcatgaaagtatgagcaagttatactatagtcacatagttgtcatgtgcagGTGGATGTTCAAGCTCAGTGAATGGGCACATTTATCCACGTATGATGTTGGTTTGCACTCTGGCTCTACAGCTTCACATATTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146996_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g72940.1 (Oryza sativa), 3'ss of exon 7
-------tctctatttgctaattccctggccattttctcttgtttagtatgaaatatcatgaaagtatgagcaagttatactata-gtcacatagttgtcatgtgcagGTGGATGTTCAAGCTCAGTGAATGGGCACATTTATCCACGTATGATGTTGGTTTGCACTCTGGCTCTACAGCTTCACATATTCTG
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gtaaagttctacacttatcaac-----aacaatatttttctgttcttttggaaacttcatatgaa-attagtaagctatattccaagtcatacatcttccatgtgtagGTGGATGTTTAAGCTTAGCGAATGGGCTCATTTTTCCTCGTATGATGTTGGTTTGCACTCGGGCTCTACTGCTTCTCATATCTTG
upper sequence: GRMZM2G146996_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT5G57190.1 (Arabidopsis thaliana), 3'ss of exon 10
tctctatttgctaattccctggccattttctcttgtttagtatgaaatatcatgaaagtatgagcaagttatactatagtcacatagttgtcatgtgcagGTGGATGTTCAAGCTCAGTGAATGGGCACATTTATCCACGTATGATGTTGGTTTGCACTCTGGCTCTACAGCTTCACATATTCTG
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------------------gtgagaaacctcttcttttaagct--aaataactagacatctcttact--taacatcatatttttcaaccttt--tgttcagATGGATGTTCAAACTAAGTGAATGGACACACTTATCAACTTATGACGTTGGTTTGAATACTGGTTCAAGTGCTTCATATATTGTG
upper sequence: GRMZM2G146996_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT4G25970.1 (Arabidopsis thaliana), 3'ss of exon 10
tctctatttgctaattccctggccattttctcttgtttagtatgaaatatcatgaaagt-atgagcaagttatactatagtcacatagttgtc-----atgtgcagGTGGATGTTCAAGCTCAGTGAATGGGCACATTTATCCACGTATGATGTTGGTTTGCACTCTGGCTCTACAGCTTCACATATTCTG
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---------gttagatttcttgtttttaaaagat-ttgaatatgacattctatgtagcttatatgttctttgcttgataggcattcaactttttaacaattttcagATGGATGTTCAAACTAAGTGAATGGACTCATCTATCAACTTATGATGTTGGTTTGAATACTGGTTCAAGTGCTTCACATATTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatatcatgaaagtatgagcaagttatactatagtcacatagttgtcatgtgcagGTGGATGTTCAAGCTCAGTGAATGGGCACATTTATCCACGTATGATGTTGGTTTGCACTCTGGCTCTACAGCTTCACATATTCTG
ttatactata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctctatttgctaattccctggccattttctcttgtttagtatgaaatatcatgaaagtatgagcaagttatactatagtcacatagttgtcatgtgcagGTGGATGTTCAAGCTCAGTGAATGGGCACATTTATCCACGTATGATGTTGGTTTGCACTCTGGCTCTACAGCTTCACATATTCTG
- - - -ttgctaa
- - - - - - - ttccctg
- - - - - - - - - - - - - - - -cttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - catgaaa