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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggaagcggcccgtccggctgaccggctcgacctcctcctcggttaatcgttttgcctggtccggagtcagtcgagtttaacctcagttttgtgccgcagGCGAGGGCCGTGATCGGGGACGGCGGCGCGGGTGACGCGCCGCGCGGCATCGCGGTGCACCCCGCCGGTGACGAGCTCGTCTGCGCCACGGCGAAGGGCT

Basic information

species Zea mays
transcript GRMZM2G146940_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146940_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g09000.1 (Oryza sativa), 3'ss of exon 1
----gtgcggaagcggcccgtccggctga-ccggctcgacctcctcctcgg---------------------ttaatcgttttgcctgg--tccggagtcagtcgagtttaacctcagt-tttgtgccgcagGCGAGGGCCGTGATCGGGGACGGCGGCGCGGGTGACGCGCCGCGCGGCATCGCGGTGCACCCCGCCGGTGACGAGCTCGTCTGCGCCACGGCGAAGGGCT---
    || ||| |||  |||   |  ||   ||  |||  |||||||||| |                     ||  |      || ||   ||||| |||      || |    |   | ||||||| |||||||||||| | | ||||||| |   || |||| ||||||||||| |||||| |||||||||||  ||| ||||||||||||||||||||||| ||||| |   
gtacgtacgggagctcccccctctcctcctcctcctcctcctcctcctccgagctcccaaggaattcgaggtttggttcgccggcttgacttccggggtcgtggttgtgtggtttgtttgtttgtgctgcagGCGAGGGCGGAGCTCGGGGAGGA--GC-CGGGCGACGCGCCGCGTGGCATCACGGTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcgttttgcctggtccggagtcagtcgagtttaacctcagttttgtgccgcagGCGAGGGCCGTGATCGGGGACGGCGGCGCGGGTGACGCGCCGCGCGGCATCGCGGTGCACCCCGCCGGTGACGAGCTCGTCTGCGCCACGGCGAAGGGCT
                              gtttaac  putative branch site (score: 3)
                             agtttaa  TA-rich tract