1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtctcatcttccttctccatatttcttcggcataggatattaacaaaggcccaaagaacaaaccatcaattctgggaactgtttctctcaatctagcagATTATGCATTGACGGCTGGAGAGACAATTGAGATAATTCTTCCGTTGTCTATACCTGGTGGTGCACCTGAACGAGCCTCATCCCTTCAT
species | Zea mays |
transcript | GRMZM2G146716_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGCCGCGTTCCACCCATGGGAGCTCGCCTTCTGCGTCATCAGCATGAG ATTATGCATTGACGGCTGGAGAGACAATTGAGATAATTCTTCCGTTGTCTA
genomic: GGCGCCGCGTTCCACCCATGGGAGCTCGCCTTCTGCGTCATCAGCATGAGgtgcctcttc ... aatctagcagATTATGCATTGACGGCTGGAGAGACAATTGAGATAATTCTTCCGTTGTCTA
aaaggcccaaagaacaaaccatcaattctgggaactgtttctctcaatctagcagATTATGCATTGACGGCTGGAGAGACAATTGAGATAATTCTTCCGTTGTCTATACCTGGTGGTGCACCTGAACGAGCCTCATCCCTTCAT
tttctctca CT-rich tract
atcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtctcatcttccttctccatatttcttcggcataggatattaacaaaggcccaaagaacaaaccatcaattctgggaactgtttctctcaatctagcagATTATGCATTGACGGCTGGAGAGACAATTGAGATAATTCTTCCGTTGTCTATACCTGGTGGTGCACCTGAACGAGCCTCATCCCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctggg