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...acctaggttcttaaattcttgcaagatagaataactttccttatcttaatctctgcatggagcagtgatgttattaacattgttggttctttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTCTATGACCTGATTTTGGAGGAACCAAATTCGTACAAGGATTTGGTTGTTA
species | Zea mays |
transcript | GRMZM2G146697_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTCEST: gi|74232177|gb|DT640091.1|DT640091
genomic: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... ttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTC
EST: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCEST: gi|149107427|gb|EE189306.2|EE189306
genomic: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... ttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCC
EST: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCCACTCTTTGCCCCCTC
genomic: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... ttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTC
ttaatctctgcatggagcagtgatgttattaacattgttggttctttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTCTATGACCTGATTTTGGAGGAACCAAATTCGTACAAGGATTTGGTTGTTA
tattaac putative branch site (score: 105)
ttctttctgt putative PPT
atgttattaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctaggttcttaaattcttgcaagatagaataactttccttatcttaatctctgcatggagcagtgatgttattaacattgttggttctttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTCTATGACCTGATTTTGGAGGAACCAAATTCGTACAAGGATTTGGTTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt