1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatgtgttgtgttcttttgtcaagccatctaaacctgtacctgcttctgttaagtcttctgtattttttaattacttttctttatttcaattcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGG
species | Zea mays |
transcript | GRMZM2G146206_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|71757929|gb|DR955866.1|DR955866
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|16919933|gb|BM074427.1|BM074427
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|24767602|gb|CA402746.1|CA402746
genomic: TGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: AGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|211116000|gb|FL153558.1|FL153558
genomic: AGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|149097485|gb|EE183357.2|EE183357
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|32909130|gb|CF013942.1|CF013942
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|71330644|gb|DR802095.1|DR802095
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAC TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTEST: gi|110517584|gb|EE022171.1|EE022171
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
EST: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT TTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
genomic: TCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaacct ... ttcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATT
tctgttaagtcttctgtattttttaattacttttctttatttcaattcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGG
ttttaat putative branch site (score: 3)
ttctgtattttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgttgtgttcttttgtcaagccatctaaacctgtacctgcttctgttaagtcttctgtattttttaattacttttctttatttcaattcatggcagTTTGTTGCTGATAAAGTTGCATATGCACTCACTCAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG