1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgatgtgtgattttctgatgtttcttgagtaaattttataaaacaaaacaaaaactaagtaaccgatgtatcctgttctgatccaatcttcttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCTCACACTGAAGAATTAGTTTGCACTTTGGAGGAAAATGAGTGGTGCTCC
species | Zea mays |
transcript | GRMZM2G146118_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCC TAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCEST: gi|78076006|gb|DV504440.1|DV504440
genomic: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCCgtaagcctct ... cttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGC
EST: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCC TAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCEST: gi|211033895|gb|FL127287.1|FL127287
genomic: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCCgtaagcctct ... cttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGC
EST: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCC TAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCEST: gi|61119775|gb|DN560736.1|DN560736
genomic: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCCgtaagcctct ... cttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGC
EST: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCC TAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCEST: gi|93012194|gb|EB637714.1|EB637714
genomic: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCCgtaagcctct ... cttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGC
EST: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCC TAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGC
genomic: GGAGGTCCCGAATGGCTGAATCCTGACCGCTGCCTGGAGAGTCTCGCGCCgtaagcctct ... cttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGC
aaacaaaaactaagtaaccgatgtatcctgttctgatccaatcttcttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCTCACACTGAAGAATTAGTTTGCACTTTGGAGGAAAATGAGTGGTGCTCC
tccaatcttcttctt CT-rich tract
aaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgtgtgattttctgatgtttcttgagtaaattttataaaacaaaacaaaaactaagtaaccgatgtatcctgttctgatccaatcttcttcttgtagTAAATCACATCATATTGAGCTTCTCGCCTTTGGATCCGTCTTATTATTTGCTCACACTGAAGAATTAGTTTGCACTTTGGAGGAAAATGAGTGGTGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA