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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttgtcgttgccttactggatgcgcagtggagcaagatgcaattttcttgaaattcattggtttcatatgtttaattgccagtcctctttccttgcagGGAAGAGTTCTCTGGTTCCCCAGTTCCTCTTAGAAGAAAATATGGAGCCTATCCTGTGCACACAGCCTAGAAGGTTTGCAGTGGTAGCCATTGCTCGAGC

Basic information

species Zea mays
transcript GRMZM2G146047_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146047_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g15300.1 (Oryza sativa), 3'ss of exon 1
--aatttgt--cgttgccttactggatgcgcagtggagcaagatgcaattttcttgaaattcattggtttcatatgtttaattgccagtcctctttccttgcagGGAAGAGTTCTCTGGTTCCCCAGTTCCTCTTAGAAGAAAATATGGAGCCTATCCTGTGCACACAGCCTAGAAGGTTTGCAGTGGTAGCCATTGCTCGAGC
   ||  ||  | ||||| |  |   |      |       |||| || |||||      | ||| |   |   |     || |  | |  | |||| ||||||| ||||||||| ||||||| ||||||||| | |||||||| ||||| || || || ||||| ||||| || ||||||||||| ||||||||||||| |  
atgatgggtaacattgccatgttttttaaatcattatctgggatgtaaatttct---gcctaatttggacctactaacggatcgata-tgttgtttcattgcagGAAAGAGTTCTATGGTTCCACAGTTCCTCCTGGAAGAAAACATGGAACCCATTCTATGCACGCAGCCAAGGAGGTTTGCAGTAGTAGCCATTGCTCAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttgaaattcattggtttcatatgtttaattgccagtcctctttccttgcagGGAAGAGTTCTCTGGTTCCCCAGTTCCTCTTAGAAGAAAATATGGAGCCTATCCTGTGCACACAGCCTAGAAGGTTTGCAGTGGTAGCCATTGCTCGAGC
                          gtttaat  putative branch site (score: 4)
                                   ccagtcctctttcctt  putative PPT
                  tttcatatgtttaatt  TA-rich tract