Sequence
atgc intronic sequence ATGC exonic sequencegtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGGCAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 5
gtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGG-CAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
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--gtatgtaattttctgtgt----agagtagtatgcggtttattttct---caggttcatggcttatttgtttactgtgtacagGGCTGATCGATCTTGCTATTAAGAACAACTGCCTGATTGGTGGTGATGATTTCAAGAGTGGACAGACAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGT-
upper sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G02210.4 (Glycine max), 3'ss of exon 5
---gtgtgtttagtttggtgtgtttgcaaagttttatggtgtt-gcatttctgttca---aagacttattatacttgttgcatgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGG-CAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
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gttggatgcttgcctttatgtcccccccacaacttaaattgtttgtatttatgctaatttgtgaactttggtttgtgttgt-tgtcatcagGGCTGATTGATCTTGCCATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGT-
upper sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgtgtttagtttggt-gtgtttgcaaagttttatggtgttgcatttctgttca--aagacttattatacttgttgcatgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGG-CAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
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----gtttcatgtagttgagttttaatcactcattgatcaatcaatattggaaatcatgactgatt-ttcttgggggtttgttgtagGTCTAATTGATATGGCGATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATGAAATCTGTCTTGGTTGATTTCCTAGT-
upper sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgtgtttagtttgg--tgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtt-tgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGG-CAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
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--gtaactaaattaaactatatctagatagtattaatgaccttcaattttct----atagtaatcacattttgcttatattatacagGGCTTATTGAATTAGCCATAAAGAGAAACTGCTTGATCGGTGGTGATGACTTCAAGAGTGGTCAGACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGT- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGGCAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
aaagacttattata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGGCAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG