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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacctgggtcgacctgtatctatgatttttttaatatcatgcccccacatctcatttctgccatgtattcacatgttgctcatttctcaattttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG

Basic information

species Zea mays
transcript GRMZM2G145107_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145107_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 3'ss of exon 1
cacctgggtcgacctgtatctatgatttttttaatatcatgccc---ccacatctcatttctgcca--tgtattcacatgttgctcatttctcaattttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG
    |   | |   ||     |||| |||||   ||  ||  |     |||||  ||  |||  ||  | |||| ||| | |  |||||  | | |||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||
--aataacttgg--tgggctaatgagtttttaggtagtatatctgtttcacatgacacatctttcagatctatttaca-gctattcattgttgattttgatgcagACCCTAGGAATAGACCATGCCATGGCATCATTCATTTGGCTTTGTGGACCTATTACTGGTTTTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120050|gb|DV538434.1|DV538434
EST:     TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAG                         ACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
genomic: TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAGgtactattgg ... ttttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
EST: gi|93282781|gb|EB675045.1|EB675045
EST:     TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAG                         ACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
genomic: TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAGgtactattgg ... ttttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
EST: gi|93284115|gb|EB676379.1|EB676379
EST:     TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAG                         ACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
genomic: TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAGgtactattgg ... ttttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
EST: gi|19855127|gb|BQ060179.1|BQ060179
EST:     GCTCTCCCTCCTCACGCCCTACGTCCAG                         ACCCTAGGAATAGACCATGCCATGGCACCATTTATTTGGCTGTGTGGGCCT
genomic: GCTCTCCCTCCTTACGCCATACATCCAGgtactattgg ... ttttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
EST: gi|78078077|gb|DV506492.1|DV506492
EST:     TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAG                         ACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
genomic: TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAGgtactattgg ... ttttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
EST: gi|149104737|gb|EE290188.2|EE290188
EST:     TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAG                         ACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT
genomic: TCCAGTTCGGATGGGCGCTGCAGCTCTCCCTCCTTACGCCATACATCCAGgtactattgg ... ttttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatctcatttctgccatgtattcacatgttgctcatttctcaattttgtgcagACCCTAGGAATAGACCATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG
                                         tcaatttt  TA-rich tract