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...cttttgagtatgaacgataggacagttaatcacttcagtggttactaaatgtggtgacaaggtgctttatgtggtgacgattttaccatttctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATTCTAGGAGGAAGACAAAGATAGTATGCACCATAGGTCCCTCAACCAACA
species | Zea mays |
transcript | GRMZM2G144730_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|88749445|gb|DY533586.1|DY533586
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|88754995|gb|DY539136.1|DY539136
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|94474601|gb|EB703559.1|EB703559
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|211511546|gb|FL285065.1|FL285065
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGACCAACGGCGTGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGTCAGCTATTGCAAATEST: gi|148981227|gb|EE027511.2|EE027511
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|148928929|gb|EC873987.2|EC873987
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|32826011|gb|CD965689.1|CD965689
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: GATCTCGCCGCCAGCACGGCCTACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|149048881|gb|EE048381.2|EE048381
genomic: GATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|78075399|gb|DV503833.1|DV503833
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATEST: gi|148958744|gb|EC905021.2|EC905021
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
EST: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAG ATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
genomic: TGACGGCGGATCTCGCCGCCAGCACGGCCAACGGCGCGGTGCATGCTCAGgtgagtggca ... tctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAAT
taaatgtggtgacaaggtgctttatgtggtgacgattttaccatttctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATTCTAGGAGGAAGACAAAGATAGTATGCACCATAGGTCCCTCAACCAACA
ccatttct CT-rich tract
atttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgagtatgaacgataggacagttaatcacttcagtggttactaaatgtggtgacaaggtgctttatgtggtgacgattttaccatttctgatgcagATGTATAGTGAGGCTAGTAGTGAAATCCCTTCACAGGCAGCTATTGCAAATTCTAGGAGGAAGACAAAGATAGTATGCACCATAGGTCCCTCAACCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - cacttca
- - - - - - - - - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgctt