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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttatagaatcatttatgagttatggaatgatacttaagatttttccctgttgcttatgcaatctaatttgatatttttcatttgttctatctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCGAGTTCGGAACATTACCGGCCCTTCAGGACGCAGTTACTGTTGTTGGTTA

Basic information

species Zea mays
transcript GRMZM2G144501_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144501_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 3'ss of exon 1
gttatagaatcatttatgagttatggaatgatacttaagatttttcc-ctgttgcttatgcaatctaatttgatatt--tttcatttgttctatctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCGAGTTCGGAACATTACCGGCCCTTCAGGACGCAGTTACTGTTGTTGGTTA
 || |||| | |   | |     |  | |  |  ||||  | |     |   ||  | |   || | || || | |   |||    || |  |||  |||||||||| ||||||||| |||| ||||| ||||||||||||||||  ||||| ||||| ||| || | || || |||||||| || || ||||||||||||||
-ttgtagattaaaacagggaagctctatt--tgtttaatgtgtacagacaaatgaatttcatattttatctggtctcaatttgtaatggttgatcgatctcagCGCTGTTAACTGTCGATGATGATGAGTTCTGGGAAGGAGTTTTGCCTGTTGAGTTTGGATCACTGCCAGCACTTCAGGATGCTGTGACTGTTGTTGGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33091067|gb|CF051061.1|CF051061
EST:     ACCTTGCCACCGTCCTGGCCATCGGCATAGAGTGCGATATTG                         CGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG
genomic: ACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgc ... tctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG
EST: gi|101391369|gb|EB817619.1|EB817619
EST:     CACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTG                         CGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG
genomic: CACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgc ... tctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgttgcttatgcaatctaatttgatatttttcatttgttctatctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCGAGTTCGGAACATTACCGGCCCTTCAGGACGCAGTTACTGTTGTTGGTTA
                                        ttctatct  CT-rich tract
               aatctaatttgatatt  TA-rich tract