Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttccttgtgcgacggccatctcctcttgcggacggctcgatttctcaatctgttgtctatttcactgtatctgacctttctttgttttatttttgttgttgtttcttccacagggagttgatttatccgctgcagCCATGAG

Basic information

species Zea mays
transcript GRMZM2G144387_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073651|gb|FL383785.1|FL383785
EST:     CGTCCTCTTCCTCTCGCTCCGTTGCTCGCCTCGGGTCAAACCCTAAGCAG                         CCATGAG
genomic: CGTCCTCTTCCTCTCGCTCCGTTGCTCGCCTCGGGTCAAACCCTAAGCAGgtacgcttcc ... tccgctgcagCCATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttatttttgttgttgtttcttccacagggagttgatttatccgctgcagCCATGAG
                                   agttgat  putative branch site (score: 5)
                                         tttatcc  CT-rich tract
     tttatttttgttgtt  TA-rich tract