1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcagactacattgttatctctgataggttcattatggttttattgttcataattctgtgcatcattatttcacaaataatgtctttttttgccattgtagGTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGATATCATCTGCAAGCGTGCAGATCTTGGTTACAACTATGGTGTTATCCTTA
species | Zea mays |
transcript | GRMZM2G143862_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGAATGCGCTTTGCAAACACACCCCAATGCTGCACTCATTGGGGAAGAG GTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGATEST: gi|32930610|gb|CF035422.1|CF035422
genomic: TGGAATGCGCTTTGCAAACACACCCCAATGCTGCACTCATTGGGGAAGAGgttggtgtta ... gccattgtagGTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGAT
EST: ACTCATTGGGGAAGAG GTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGAT
genomic: ACTCATTGGGGAAGAGgttggtgtta ... gccattgtagGTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGAT
ttcataattctgtgcatcattatttcacaaataatgtctttttttgccattgtagGTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGATATCATCTGCAAGCGTGCAGATCTTGGTTACAACTATGGTGTTATCCTTA
tctttttttgccatt CT-rich tract
attatttcacaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagactacattgttatctctgataggttcattatggttttattgttcataattctgtgcatcattatttcacaaataatgtctttttttgccattgtagGTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGATATCATCTGCAAGCGTGCAGATCTTGGTTACAACTATGGTGTTATCCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaaa