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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacgagctagccaggaacccgaagaaataattgatcaaatctctcaaacgataggttgaaatttccaacttggctttacacattaggagcaatcttgtggttcatgttaacagtgaattggctcttactgtaattggtgtggtttaatcaaagatgacatttttagGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA

Basic information

species Zea mays
transcript GRMZM2G143804_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143804_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 4
----gtacaacgagctagccaggaacccgaagaaataattgatcaaatctctcaaacgataggttgaaatttccaacttggctttacacattaggagcaatcttgtggttcatgttaacagtgaattggctcttactgtaattggtgtggtttaatcaaagatgacattttt-agGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA
     | || |    |   |  || ||   | |     ||   | |   | |    | | |     | || |  |      |   |||        ||||| || |  ||  | |  | |||   ||     |   | |   | || |      || || |||| ||||||| |||||||||  ||||| ||||||||||| || ||||| || ||||| |||||||| ||||| || |||||||||||||||| |||||| |||||||||||||
gttgcttcacctttttgaacttgaccctatatatgcctttcccctatcttttgtttccacaaa---agatcttaatacaaaccaaacattcatttcgcaat-ttatattttgtatgtatagtatctttttcatccatctgtgttgtttaacaagatgaacgatggcatttttcagGTTTATCCGATGTATAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTA

upper sequence: GRMZM2G143804_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
gtacaacgagctagccaggaacccgaagaaataattgatcaaatctctcaaacgataggttgaaatttccaacttggctttacacattaggagcaatcttgtggttcatgttaacagtgaattggctcttactgtaatt---ggtgtggtttaatcaaagatgacatttttagGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA
                                                                              || | || ||   |    || | ||||   | || | |  || ||||    || |||  ||   |  ||| || | |  ||    ||||||| |||| |||| |||||||||||| || ||||| |||||| | ||||| ||||| || |||||||| ||||| ||||| ||||   | || ||||| | |||||
-----------------------------------------------------------------------------gttcatacgtttataat--tcctttggtc--tttttatacagatttggaaaata-tgtgtttccagaagtgcttaagtttaa----acattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA

upper sequence: GRMZM2G143804_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G09660.1 (Glycine max), 3'ss of exon 4
gtacaacgagctagccaggaacccgaagaaataattgatcaaatctctcaaacgataggttgaaatttccaacttggctttacacattaggagcaatcttgtggttcatgttaacagtgaattggctcttactgtaattggtgtggtttaatcaaagatgacatttttagGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA
                                                                         |     ||  | | |       ||||| |  | ||  || | |    ||  | | || ||  || || |   ||||||         ||||||| |||| |||| |||||||||||| || ||||| |||||| | ||||| |||||||| |||||||| ||||| ||||| ||||   | || ||||| | |||||
-----------------------------------------------------------------------gttcatacttttataattcctttcatctttttatacagatttagaaaatatctg-tatttctagaagtgcttaagtttaa---------acattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA

upper sequence: GRMZM2G143804_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 3
gtacaacgagctagccaggaacccgaagaaataattgatcaaatctctcaaacgataggttgaaatttccaacttggctttacacattaggagcaatcttgtggttcatgttaacagtgaattggctcttactgtaattggtgtggtttaatcaaagatgacatttttagGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA
                                           | | |  |   |||   ||   ||   || ||  ||||||  | | | |    | | || |  | |  | |     |    ||  ||| |||| ||         | ||||    |    |    |||| ||||  |||||||||||||| || || |||||| |||| || |||||||| |||||||| ||||| ||||| |||| | | || || || || || |
------------------------------------------gtgttttcacttatactatg---ttagaaagttttctttacttaat-gaactgttatggtagcccttaattattcatataaagcatttattgtactt--------ctcatcagctttcttttacacagGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTACAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTCACTGGATTTCAGAACCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgaattggctcttactgtaattggtgtggtttaatcaaagatgacatttttagGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA
                                              cattttt  CT-rich tract
                               tttaatcaaa  TA-rich tract