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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctaccatttccctccctctcacgcgtgctcctcccggatagatagatctcagagccagtttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC

Basic information

species Zea mays
transcript GRMZM2G143651_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143651_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g57180.1 (Oryza sativa), 3'ss of exon 1
-----------------------gtacct---accatttccctccctctcacgcgtgctcctcccggatagatagatctcagagccagtttccttt-------cagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC
                       |   |    ||||   |    | || | |||| |  || ||||    | ||||||| ||||   ||||   ||       |||| |||  ||||||||||||||| || | |||||| |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||
gtatggaggaggcgcccttccgggcgtccgggaccagccctgaacatcgcccgcgggtgccccccgag--ggtagatcttagaggtggtttgggttttcgatgcagGATTGGGTGGAGCGGATGGCGCGAGGTACATGTCCGCGAGGGCGCCGGCGGTCAAGGGGACGGGGCATCTCGTCCGCAAGGGAACCGGAGGGAGGTCGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211395444|gb|FL169334.1|FL169334
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398059|gb|FL169341.1|FL169341
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398065|gb|FL169347.1|FL169347
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|29947686|gb|CB816784.1|CB816784
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395443|gb|FL169333.1|FL169333
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398057|gb|FL169339.1|FL169339
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|8367566|gb|BE050511.1|BE050511
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395442|gb|FL169332.1|FL169332
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395441|gb|FL169331.1|FL169331
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392815|gb|FL169318.1|FL169318
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395435|gb|FL169325.1|FL169325
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|22545624|gb|BU097983.1|BU097983
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149064147|gb|EE286443.2|EE286443
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|67037324|gb|CO464172.1|CO464172
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31348826|gb|CD433183.1|CD433183
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149074514|gb|EE162909.2|EE162909
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398061|gb|FL169343.1|FL169343
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|148939122|gb|EC883548.2|EC883548
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211390183|gb|FL169301.1|FL169301
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398056|gb|FL169338.1|FL169338
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|20802704|gb|BQ293754.1|BQ293754
EST:     CCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGTGTCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGTTCTCCGGCG
genomic: CCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGG-G-CTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGG-GCGCCGGCG
EST: gi|149086938|gb|EE176480.2|EE176480
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398063|gb|FL169345.1|FL169345
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|30087963|gb|CB886168.1|CB886168
EST:     CATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: CATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|78087119|gb|DV515512.1|DV515512
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|32850829|gb|CD990510.1|CD990510
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|148977668|gb|EE026094.2|EE026094
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|21809651|gb|BQ667969.1|BQ667969
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|148963040|gb|EE013991.2|EE013991
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|148931470|gb|EC874468.2|EC874468
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211390189|gb|FL169307.1|FL169307
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398062|gb|FL169344.1|FL169344
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|50322405|gb|CO517531.1|CO517531
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398070|gb|FL169352.1|FL169352
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149096347|gb|EE182072.2|EE182072
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395433|gb|FL169323.1|FL169323
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149069994|gb|EE158394.2|EE158394
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392819|gb|FL169322.1|FL169322
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31354660|gb|CD439017.1|CD439017
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392813|gb|FL169316.1|FL169316
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149077783|gb|EE166504.2|EE166504
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31664374|gb|CD573099.1|CD573099
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398060|gb|FL169342.1|FL169342
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31911131|gb|CD651773.1|CD651773
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|30031665|gb|CB833516.1|CB833516
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31348834|gb|CD433191.1|CD433191
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392816|gb|FL169319.1|FL169319
EST:     TGCCATCGCCG-CTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCAT
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCAT
EST: gi|211392811|gb|FL169314.1|FL169314
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149069952|gb|EE158352.2|EE158352
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|50322403|gb|CO517529.1|CO517529
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211390186|gb|FL169304.1|FL169304
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGG
EST: gi|211395446|gb|FL169336.1|FL169336
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392814|gb|FL169317.1|FL169317
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392809|gb|FL169312.1|FL169312
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211390185|gb|FL169303.1|FL169303
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGC
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGC
EST: gi|211392810|gb|FL169313.1|FL169313
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31358221|gb|CD442578.1|CD442578
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211390188|gb|FL169306.1|FL169306
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211022386|gb|FL169353.1|FL169353
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|32805463|gb|CD957697.1|CD957697
EST:     GATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: GATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398066|gb|FL169348.1|FL169348
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149013853|gb|EE043334.2|EE043334
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149106264|gb|EE291962.2|EE291962
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395437|gb|FL169327.1|FL169327
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211398069|gb|FL169351.1|FL169351
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|71773401|gb|DR971305.1|DR971305
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395438|gb|FL169328.1|FL169328
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|71445608|gb|DR826658.1|DR826658
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392806|gb|FL169309.1|FL169309
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|29577180|gb|CB617292.1|CB617292
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|149055287|gb|EE156221.2|EE156221
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211395436|gb|FL169326.1|FL169326
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|31612343|gb|CD568965.1|CD568965
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211022388|gb|FL169355.1|FL169355
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
EST: gi|211392808|gb|FL169311.1|FL169311
EST:     TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAG                         GGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG
genomic: TGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 146

GCGTGGAGGCGTCACCTCCTCGACCACCACCTCTCCCCTTCAACCTCGGCTGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 118

GCGTGGAGGCGTCACCTCCTCGACCACCACCTCTCCCCTTCAACCTCGGCTGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 98

GCGTGGAGGCGTCACCTCCTCGACCACCACCTCTCCCCTTCAACCTCGGCTGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 119

GCGTGGAGGCGTCACCTCCTCGACCACCACCTCTCCCCTTCAACCTCGGCTGCCATCGCCGCCTTCAGATCCGCCTCCCAGCCCGGGCTCGCTCCCCAAGgtacctacca ... ttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctctcacgcgtgctcctcccggatagatagatctcagagccagtttcctttcagGGTTGTTTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTC
 ctctcac  putative branch site (score: 119)
                                            tttcctttc  putative PPT
                       atagata  TA-rich tract