1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttggtctctttgtgttgctttgctcttctgcccatattttttgctccatgggatactcttgagttttgctaaaatgggagttgcatttgctatcaacagACATTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGATGTAAGCAAGGTATCAGCCGTGTTACTGATTACAAGGGAAGAGGCATGTG
species | Zea mays |
transcript | GRMZM2G143644_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGCCTTGAGGCCGAGGGTACCGACGAGGTGGTGTCCAGACGCGAGCAG ACWTTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGATEST: gi|101399525|gb|EB821630.1|EB821630
genomic: AGGGCCTTGAGGCCGAGGGTACCGACGAGGTGGTGTCCAGACGCGAGCAGgtgaggccga ... ctatcaacagACATTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGAT
EST: AGGGCCTTGAGGCCGAGGGTACCGACGAGGTGGTGTCCAGACGCGAGCAG ACATTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGAT
genomic: AGGGCCTTGAGGCCGAGGGTACCGACGAGGTGGTGTCCAGACGCGAGCAGgtgaggccga ... ctatcaacagACATTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGAT
tccatgggatactcttgagttttgctaaaatgggagttgcatttgctatcaacagACATTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGATGTAAGCAAGGTATCAGCCGTGTTACTGATTACAAGGGAAGAGGCATGTG
tgctaaa putative branch site (score: 101)
taaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggtctctttgtgttgctttgctcttctgcccatattttttgctccatgggatactcttgagttttgctaaaatgggagttgcatttgctatcaacagACATTTGTGGTTCTAAATGAAGAAGTTATATCTGAGCGTCAAGAGGAAGATGTAAGCAAGGTATCAGCCGTGTTACTGATTACAAGGGAAGAGGCATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - -tgttgct
- - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatt