1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgtcttggttcggaagaaatgtcattttcttgcttgccgagttacctaccaaaattgatttcaagtaacattaactgcattttttggttttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTATTTAACCAGGCCAAAGAGAATGCATCGGAGGCTGGCGCCAAGAAGCCC
species | Zea mays |
transcript | GRMZM2G142768_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|211356607|gb|FK980322.1|FK980322
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCEST: gi|211217174|gb|FL271883.1|FL271883
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCC
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|149083988|gb|EE173376.2|EE173376
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|211356602|gb|FK980317.1|FK980317
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: ATGCGGCGCCCAACTCGCCAGGGACGGGTCGCGTCTGGC-ACCCACAGAG CTTTTGAGGTGGTGGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCEST: gi|78114895|gb|DV533283.1|DV533283
genomic: ATGCGGCGCCCAACTCGCCAGGGACGG-TCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAG-TGGTGGG-ATGGCCACCCATAAGAACTTTCAGGATGAACAGC
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|91049936|gb|EB160354.1|EB160354
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|71437812|gb|DR818862.1|DR818862
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|211250489|gb|FK980310.1|FK980310
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|71301549|gb|DR786822.1|DR786822
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|211250491|gb|FK980312.1|FK980312
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGACTGGTGGGATGGCCACCCATAAGAACTTTCAEST: gi|113702671|gb|EE680175.1|EE680175
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCA
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|211356600|gb|FK980315.1|FK980315
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGEST: gi|71433960|gb|DR815010.1|DR815010
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|93281748|gb|EB674012.1|EB674012
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|148961892|gb|EE012679.2|EE012679
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|78090139|gb|DV518513.1|DV518513
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|91050039|gb|EB160457.1|EB160457
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|71768773|gb|DR966710.1|DR966710
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|76018364|gb|DT945534.1|DT945534
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|76283166|gb|DV022734.1|DV022734
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|71418902|gb|DR804585.1|DR804585
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|149000117|gb|EE037243.2|EE037243
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|50333994|gb|CO529120.1|CO529120
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|71444561|gb|DR825611.1|DR825611
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTEST: gi|76020485|gb|DT947655.1|DT947655
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|211356608|gb|FK980323.1|FK980323
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGG-ATGGCCACCCATAAGAACTTTCAEST: gi|78108266|gb|DV526684.1|DV526684
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCA
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCCGGATGAACAGCCTEST: gi|211356605|gb|FK980320.1|FK980320
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCT
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGEST: gi|76924731|gb|DV170106.1|DV170106
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGCAGEST: gi|32800222|gb|CD952458.1|CD952458
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCAC--AG-AGgtgagcagca ... tttatagc
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGEST: gi|148958908|gb|EE010470.2|EE010470
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
EST: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAG CAGCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
genomic: GATGCGGCGCCCAACTCGCCAGGGACGGTCGCGTCTGGCCACCCACAGAGgtgagcagca ... tttatagcagC---TTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAG
acctaccaaaattgatttcaagtaacattaactgcattttttggttttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTATTTAACCAGGCCAAAGAGAATGCATCGGAGGCTGGCGCCAAGAAGCCC
cattaac putative branch site (score: 18)
attttttggttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtcttggttcggaagaaatgtcattttcttgcttgccgagttacctaccaaaattgatttcaagtaacattaactgcattttttggttttatagcagCTTTGGAGTGGTGGGATGGCCACCCATAAGAACTTTCAGGATGAACAGCCTATTTAACCAGGCCAAAGAGAATGCATCGGAGGCTGGCGCCAAGAAGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - gaagaaa
- - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - cctacca