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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcttcttctctggatattacttcaatattaaatggtaatcattttcttcttggcaactgtatttttgttgacagttaggcaacagtttttttttgtataacatgtcatgtatataatgtatatgtcattatgatcatgcaaattagGATGCACTGGAGCTTGATCATTGTTTGCATGCCTACAAAAGAGGCAGATTCTGGGCCAATAATACTTCACTTGGACTCTCTTGGTCTTCACTCCAGTCAA

Basic information

species Zea mays
transcript GRMZM2G142553_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149088270|gb|EE177364.2|EE177364
EST:     GGTGTAGATATTTTTAAGAAAGCGTACATAATTTTGCCGATTAATGAATC                         GATGCACTGGAGCTTGATCATTGTTTGCATGCCTACAAAAGAGGCAGATTC
genomic: GGTGTAGATATTTTTAAGAAAGCGTACATAATTTTGCCGATTAATGAATCgtaagttgct ... tgcaaattagGATGCACTGGAGCTTGATCATTGTTTGCATGCCTACAAAAGAGGCAGATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtataacatgtcatgtatataatgtatatgtcattatgatcatgcaaattagGATGCACTGGAGCTTGATCATTGTTTGCATGCCTACAAAAGAGGCAGATTCTGGGCCAATAATACTTCACTTGGACTCTCTTGGTCTTCACTCCAGTCAA
   gtataac  putative branch site (score: 3)
                  tatataatgtatatgt  TA-rich tract