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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcccgccccccttctctccctttccccctgtgcgaaaaaccgagcgctccaagccctgatgtaaatttggatctggatcagttattacaagtgtatacgtgatgcctacagtaactttgacagattgattttttttttaccgcacccctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGTGCAGAGACCGCGAGGGATATCATCACCACGTCCGGCCAAATCCAACCCC

Basic information

species Zea mays
transcript GRMZM2G142502_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014312|gb|EE043889.2|EE043889
EST:     ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|78082996|gb|DV511389.1|DV511389
EST:     ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|78081830|gb|DV510242.1|DV510242
EST:     CTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: CTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|211422460|gb|FK998906.1|FK998906
EST:     ACTGGGACGAGCG-CCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|149079392|gb|EE168367.2|EE168367
EST:     ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|101399620|gb|EB821656.1|EB821656
EST:     ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAG                         TCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT
genomic: ACTGGGACGAGCGCCCCCCGCGCTTCTGCAGGCGAGCACCCCGCCACCAGgtacgcccgc ... ctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctacagtaactttgacagattgattttttttttaccgcacccctgtgtgcagTCGGAGATGAACGCGTCCAGGAAATCCAGCCATCTCTCCAGCAAGGACAGTGCAGAGACCGCGAGGGATATCATCACCACGTCCGGCCAAATCCAACCCC
                          ttttttttttaccgca  CT-rich tract
                   agattgattttttttt  TA-rich tract