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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcctattctatggaatatttcctctctatttcttggaccttgtttatttgagtttctcactttgaacacagggtgaaattatttgtccatgcttttcagGATACGTGGATTTGATCCACCACCAGCTCGAGTTTTTGCTTGGCATTGCCCTGGAGTTGGATGCATTCAAGTATT

Basic information

species Zea mays
transcript GRMZM2G141693_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107187|gb|DV525605.1|DV525605
EST:     GATATGTCCGTCTTCTCCGCTGCCACTGTGCCGCCTCGCCCAGCCACGCA                         GATACGTGGATTTGATCCACCACCAGCTCGAGTTTTTGCTTGGCATTGCCC
genomic: GATATGTCCGTCTTCTCCGCTGCCACTGTGCCGCCTCGCCCAGCCACGCAgtaagcaccc ... tgcttttcagGATACGTGGATTTGATCCACCACCAGCTCGAGTTTTTGCTTGGCATTGCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgagtttctcactttgaacacagggtgaaattatttgtccatgcttttcagGATACGTGGATTTGATCCACCACCAGCTCGAGTTTTTGCTTGGCATTGCCCTGGAGTTGGATGCATTCAAGTATT
         ttctcac  putative branch site (score: 2)
                                             tgcttttc  putative PPT
                             tgaaattattt  TA-rich tract