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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcagtagcaccattgcattgtatatacccatctgaagaattggggcctttgtcacatctttatgcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGACGGTCATGGGGCCCATCCCGGCGGTGAAGTGGGACGAGAGCCGGGGGCGG

Basic information

species Zea mays
transcript GRMZM2G141665_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141665_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09430.1 (Oryza sativa), 3'ss of exon 2
---------------gtagcagtagcaccattgcattgtatatac--------ccatctgaagaattggggcctttgtcacatct-ttatgcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGACGGTCATGGGGCCCATCCCGGCGGTGAAGTGGGACGAGAGCCGGGGGCGG
                 ||||   | | || || ||  || || |        | | ||||||     |  |  |       ||  |||         ||||| || |||||||||||||||||||||||||| |  ||||| |||| |||| ||||||| || || || ||||| || |||||||||||| ||||| ||
attctgacgttaccttcagcacaggtagcaatgtatcatacatgctgcagctactaactgaagttactgaactgtcactctgtcaattaattgcacttagGGCTGCGAAGCTCGGGATGAAGCTGGAATGGACTGAAGACGGGGTGAAGACGATCATGGGCCCGATACCAGCGGTCAAATGGGACGAGAGCAGGGGGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375552|gb|CF624220.1|CF624220
EST:     GGATGGCAATCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAG                         GGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
genomic: GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGgtagcagtag ... gcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
EST: gi|149100507|gb|EE186588.2|EE186588
EST:     GATGGCAGTCGACAATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAG                         GGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
genomic: GATGGCAGTCGAC-ATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGgtagcagtag ... gcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
EST: gi|89248861|gb|DY620647.1|DY620647
EST:     GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAG                         GGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
genomic: GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGgtagcagtag ... gcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
EST: gi|148928188|gb|EE284684.2|EE284684
EST:     GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAG                         GGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
genomic: GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGgtagcagtag ... gcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
EST: gi|40333814|gb|CK367884.1|CK367884
EST:     GGATGGCAATCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAG                         GGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
genomic: GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGgtagcagtag ... gcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
EST: gi|40335389|gb|CK369459.1|CK369459
EST:     GGATGGCAATCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAG                         GGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC
genomic: GGATGGCAGTCGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGgtagcagtag ... gcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatatacccatctgaagaattggggcctttgtcacatctttatgcatgaacagGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGCGTGAGGACGGTCATGGGGCCCATCCCGGCGGTGAAGTGGGACGAGAGCCGGGGGCGG
                                     atctttat  TA-rich tract