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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgcgtggatctggtgctttccggtgttgtatgctgaagtgactcctttttttttctctgcctgtggtgctggtggcgggcgacgggcgtactccggcagCCGCTCCGGTTGGATATCAAG

Basic information

species Zea mays
transcript GRMZM2G141587_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016008|gb|EB641528.1|EB641528
EST:     GCGCTCCTCGCCTCGCCGCTGCCTCCGTAGCCGTCGCGGGCGCCACCATG                         CCGCTCCGGTTGGATATCAAG
genomic: GCGCTCCTCGCCTCGCCGCTGCCTCCGTAGCCGTCGCGGGCGCCACCATGgtacgtgcac ... actccggcagCCGCTCCGGTTGGATATCAAG
EST: gi|76282808|gb|DV022376.1|DV022376
EST:     GCGCTCCTCGCCTCGCCGCTGCCTCCGTAGCCGTCGCGGGCGCCACCATG                         CCGCTCCGGTTGGATATCAAG
genomic: GCGCTCCTCGCCTCGCCGCTGCCTCCGTAGCCGTCGCGGGCGCCACCATGgtacgtgcac ... actccggcagCCGCTCCGGTTGGATATCAAG
EST: gi|78078423|gb|DV506837.1|DV506837
EST:     GCGCTCCTCGCCTCGCCGCTGCCTCCGTAGCCGTCGCGGGCGCCACCATG                         CCGCTCCGGTTGGATATCAAG
genomic: GCGCTCCTCGCCTCGCCGCTGCCTCCGTAGCCGTCGCGGGCGCCACCATGgtacgtgcac ... actccggcagCCGCTCCGGTTGGATATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttttctctgcctgtggtgctggtggcgggcgacgggcgtactccggcagCCGCTCCGGTTGGATATCAAG
     tttttct  TA-rich tract