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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgctcgagttctccgcctcgtcctcctaccgcgcttgcgtcgctgcaagatctgatctcctcttgctgtggttttgtggcgttttcgtcgtgcagGATGACTCGGAGAACAACGCACCCTCGACGCCGGGGTCCCCCGGGTTCAGCACCGACCGGCTGCCACCCAACACCACCACCAGCCGCGGCGCCACCGACC

Basic information

species Zea mays
transcript GRMZM2G139894_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139894_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 3'ss of exon 1
gtaagcgctcgagttctccgcctcgtcctcctaccgcgcttgcgtcgctgcaagatctgatctcctcttgctgtggttttgtggcgttttcgtcgtgcagGATGACTCGGAGAACAACGCACCCTCGACGCCGGGGTCCCCCGGGTTCAGCACCGACCGGCTGCCACCCAACACCACCACCAGCCGCGGCGCCACCGACC
          |    |||| | || || |||| | ||||    |  || ||  |||||||   |  || || ||| |||| |  | |||| |    | |||||||||||||||||||||| || |||||||||||||| || ||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||
----------gtaagctccccttcctcttccttcagcgcggcggcggcggccggatctga---cgcctcgccgtgtttttttttcttttttgg---gtagGATGACTCGGAGAACAACGCGCCGTCGACGCCGGGGTCGCCGGGGTTCAGCACAGACAGGCTGCCGCCGAACACCACCACCAGCCGCGGCGCCACCGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctgcaagatctgatctcctcttgctgtggttttgtggcgttttcgtcgtgcagGATGACTCGGAGAACAACGCACCCTCGACGCCGGGGTCCCCCGGGTTCAGCACCGACCGGCTGCCACCCAACACCACCACCAGCCGCGGCGCCACCGACC
         atctgat  putative branch site (score: 4)
                                         ttttcgtc  putative PPT