1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggacaaacctttctcgtacacggttcgtgtgcgttcagctttcactgcccttggctgtgtggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCCATGCGGGCACTACCAGGTTGCGCCCACGGAGGAGGAGGTTCGGATGGG
species | Zea mays |
transcript | GRMZM2G139882_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|148971260|gb|EE022122.2|EE022122
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|78107151|gb|DV525569.1|DV525569
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|8367047|gb|BE049992.1|BE049992
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|211377505|gb|FL195228.1|FL195228
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGTGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|74239578|gb|DT647492.1|DT647492
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|91056902|gb|EB167320.1|EB167320
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|76922912|gb|DV169240.1|DV169240
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|149100775|gb|EE186869.2|EE186869
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCEST: gi|78083992|gb|DV512385.1|DV512385
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
EST: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCG GTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
genomic: GCGGGCGGCGGTGGAGACGGCCCCGCTGTGCCGACGCTCCATCTTAACCGgtaggacaaa ... tggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggacaaacctttctcgtacacggttcgtgtgcgttcagctttcactgcccttggctgtgtggggcgcagGTTCCGGCCGTCGTACAATGTGTTGCCTGGGGCGTACCTGCCTGTGGGCGCCATGCGGGCACTACCAGGTTGCGCCCACGGAGGAGGAGGTTCGGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG