1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatcagcccggccttctttcaagccccgacctagggtttctgcctgtttgttcagattttgttggttcgatctcaggcggctgtttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTACGACGAGGAGGTCGACGAAGAGGAGGGACACCCCGGGAGGCGGGTAGG
species | Zea mays |
transcript | GRMZM2G139643_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|50336822|gb|CO531948.1|CO531948
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|76014054|gb|DT941224.1|DT941224
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCC--G --T---GTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|71417068|gb|DR803915.1|DR803915
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|211508855|gb|FL158319.1|FL158319
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTTCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|76282448|gb|DV022016.1|DV022016
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|71768840|gb|DR966777.1|DR966777
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTEST: gi|71446122|gb|DR827172.1|DR827172
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
EST: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTG TTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
genomic: AGGGTTTGCTCAGGCCCCGAACCCCACCCTTGGATTGCTCTGATTCCGTGgtaatcagcc ... tttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGT
tctgcctgtttgttcagattttgttggttcgatctcaggcggctgtttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTACGACGAGGAGGTCGACGAAGAGGAGGGACACCCCGGGAGGCGGGTAGG
ctgtttccc CT-rich tract
attttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcagcccggccttctttcaagccccgacctagggtttctgcctgtttgttcagattttgttggttcgatctcaggcggctgtttcccgaagTTTGCAGTATGGCGGGGTACCCGGAGGACAACCAGCACGAGTTGAACGGGTACGACGAGGAGGTCGACGAAGAGGAGGGACACCCCGGGAGGCGGGTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG