1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagccacttttgtactacttacttcctttccatgttgaagcctcgatgtaattctggattagattttgtcattcaaactcatgcttgtttcgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCTTCTAGTTCCAGAAGGCTATATAGATGGAAAAGGGTATTGCTCAAAGTA
species | Zea mays |
transcript | GRMZM2G139462_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCCGCGCCTGCGCCG-CATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|76917142|gb|DV166699.1|DV166699
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175208|gb|FL094965.1|FL094965
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175204|gb|FL094961.1|FL094961
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211173536|gb|FL094956.1|FL094956
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211173532|gb|FL094952.1|FL094952
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175211|gb|FL094968.1|FL094968
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|91878696|gb|EB408653.1|EB408653
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175206|gb|FL094963.1|FL094963
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211173530|gb|FL094950.1|FL094950
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175215|gb|FL094972.1|FL094972
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175210|gb|FL094967.1|FL094967
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAMKATTCEST: gi|211175214|gb|FL094971.1|FL094971
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211173535|gb|FL094955.1|FL094955
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175207|gb|FL094964.1|FL094964
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175213|gb|FL094970.1|FL094970
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175212|gb|FL094969.1|FL094969
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211173531|gb|FL094951.1|FL094951
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCEST: gi|211175202|gb|FL094959.1|FL094959
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
atgtaattctggattagattttgtcattcaaactcatgcttgtttcgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCTTCTAGTTCCAGAAGGCTATATAGATGGAAAAGGGTATTGCTCAAAGTA
cttgtttcgtttttc CT-rich tract
attagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagccacttttgtactacttacttcctttccatgttgaagcctcgatgtaattctggattagattttgtcattcaaactcatgcttgtttcgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTCTTCTAGTTCCAGAAGGCTATATAGATGGAAAAGGGTATTGCTCAAAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA