1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgggtttactctcatggtcatggccgatgagcgctacagagatcgtgttggctctatttggttagttttcgtcctaaggctcgatcttctgcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTACTGGCCGTTCGAGAAGCTGCGGGTCTCCATCACCGGGGCCGGCGGGTTC
species | Zea mays |
transcript | GRMZM2G138907_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|148949983|gb|EC895503.2|EC895503
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|101386394|gb|EB815216.1|EB815216
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|211358765|gb|FL074500.1|FL074500
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|83279229|gb|DV943237.1|DV943237
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|148945328|gb|EC890545.2|EC890545
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|148931952|gb|EC875193.2|EC875193
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|211361417|gb|FL074505.1|FL074505
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCYATTCACTGCCAG AAT-GSGCTCAACAAGGAGTACACGTACGCGGA-STGGAGAAGGAGCCGTAEST: gi|211181476|gb|FL002110.1|FL002110
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|50337860|gb|CO532986.1|CO532986
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|76287580|gb|DV027148.1|DV027148
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|211181474|gb|FL002108.1|FL002108
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|211361419|gb|FL074507.1|FL074507
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|211181473|gb|FL002107.1|FL002107
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|76282746|gb|DV022314.1|DV022314
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|211361416|gb|FL074504.1|FL074504
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCYATTCACTGCCAG AAT-GSGCTCAACAAGGAGTACACGTACGCGGA-STGGAGAAGGAGCCGTAEST: gi|149071845|gb|EE160234.2|EE160234
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTAEST: gi|78119627|gb|DV538011.1|DV538011
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
EST: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAG AATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
genomic: CCCCGTCTCGCTCCAGCGGCTCCACGCCACCGTTTGCCATTCACTGCCAGgtatacagtc ... gcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTA
tgttggctctatttggttagttttcgtcctaaggctcgatcttctgcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTACTGGCCGTTCGAGAAGCTGCGGGTCTCCATCACCGGGGCCGGCGGGTTC
tcttctgc CT-rich tract
ttagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtttactctcatggtcatggccgatgagcgctacagagatcgtgttggctctatttggttagttttcgtcctaaggctcgatcttctgcgtgtgcagAATGGCGCTCAACAAGGAGTACACGTACGCGGAGCTGGAGAAGGAGCCGTACTGGCCGTTCGAGAAGCTGCGGGTCTCCATCACCGGGGCCGGCGGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC