1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttagctgtctgattttttagtggtatctgaataaatagatgactactcatgtatatctttcttaccctgtccttataattagcattgttttttttcacagACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCAAGAGTGGTTGCTTGCAACCGGCCTCACAG
species | Zea mays |
transcript | GRMZM2G138686_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACTGCGGAATGGTCCCCGACATAGCCGTCGAGAGGCTCATCTCCCAGG ACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCAAGAGTGGTTGCTTGAAEST: gi|32826562|gb|CD966240.1|CD966240
genomic: CGACTGCGGAATGGACCCCGACATAGCCGTCGAGAGGCTCATCTCCCAGGgtaagggcat ... tttttcacagACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCAAGAGTGGTTGCTTGCA
EST: CGACTGCGGAATGGTCCCCGACATAGCCGTCGAGAGGCTCATCTCCCAGG ACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCGAGAGTGGTTGCTTGAA
genomic: CGACTGCGGAATGGACCCCGACATAGCCGTCGAGAGGCTCATCTCCCAGGgtaagggcat ... tttttcacagACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCAAGAGTGGTTGCTTGCA
ctcatgtatatctttcttaccctgtccttataattagcattgttttttttcacagACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCAAGAGTGGTTGCTTGCAACCGGCCTCACAG
ttcttac putative branch site (score: 2)
cattgttttttttc putative PPT
ttataattagcattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagctgtctgattttttagtggtatctgaataaatagatgactactcatgtatatctttcttaccctgtccttataattagcattgttttttttcacagACCCCTGCACAACTAAGGTGGAGCCTTACAAAGCAAGAGTGGTTGCTTGCAACCGGCCTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - ctgattt
- - - - - - - - - - - - -tctgaat