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...ggcattcgaattggcaacatgatcttccacaaaagcgaagaaactgcgcgcccagtatttgcccatcttgaccttggtgatctcgattgagccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTGGTGTTGGGAGCTCCTCGAGGCCAGCTAATGGATTCAAGGGGGCAGCCA
species | Zea mays |
transcript | GRMZM2G138676_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGAGCTCCTCGTCGATCTCTTCTTCTCTGCGAGGTTTCGGTCTGAG TTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTEST: gi|71312508|gb|DR792787.1|DR792787
genomic: TGCAAGAGCTCCTCGTCGA--TC-TCTTCTCTGCGAGGTTTCGGTCTGAGgtactggctg ... gccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
EST: TGCTGCAAGAGCTCCTCGTCGATCTCTTCTCTGCGAGGTTTCGGTCTGAG TTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTEST: gi|211140437|gb|FL390026.1|FL390026
genomic: TGCTGCAAGAGCTCCTCGTCGATCTCTTCTCTGCGAGGTTTCGGTCTGAGgtactggctg ... gccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
EST: TGCAAGAGCTCCTCGTCGATCTCTTCTTCTCTGCGAGGTTTCGGTCTGAG TTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCNTGCTEST: gi|211215298|gb|FL416186.1|FL416186
genomic: TGCAAGAGCTCCTCGTCGATCTCTTCT-CT--GCGAGGTTTCGGTCTGAGgtactggctg ... gccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
EST: TGCAAGANCTCCTCGTCGATCTCTTCTTCTCTGCGAGGTTTCGGTCTGAG TTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTEST: gi|89764128|gb|DY691048.1|DY691048
genomic: TGCAAGAGCTCCTCGTCGA--TC-TCTTCTCTGCGAGGTTTCGGTCTGAGgtactggctg ... gccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
EST: TGCTGCAAGAGCTCCTCGTCGATCTCTTCTCTGCGAGGTTTCGGTCTGAG TTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTEST: gi|91050634|gb|EB161052.1|EB161052
genomic: TGCTGCAAGAGCTCCTCGTCGATCTCTTCTCTGCGAGGTTTCGGTCTGAGgtactggctg ... gccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
EST: TGCTGCAAGAGCTCCTCGTCGATCTCTTCTCTGCGAGGTTTCGGTCTGAG TTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
genomic: TGCTGCAAGAGCTCCTCGTCGATCTCTTCTCTGCGAGGTTTCGGTCTGAGgtactggctg ... gccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCT
gcgcgcccagtatttgcccatcttgaccttggtgatctcgattgagccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTGGTGTTGGGAGCTCCTCGAGGCCAGCTAATGGATTCAAGGGGGCAGCCA
tcttgac putative branch site (score: 160)
ccttacc putative PPT
agtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcattcgaattggcaacatgatcttccacaaaagcgaagaaactgcgcgcccagtatttgcccatcttgaccttggtgatctcgattgagccttaccagTTACCACATTGCTGGAGTGGAGGTATGGCGTATTCTGGACAAAGGCATGCTGGTGTTGGGAGCTCCTCGAGGCCAGCTAATGGATTCAAGGGGGCAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
ggcattc
- - - - - - - - -catgatc
- - - - - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgat