Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaaaccctccgtccctcccatcgatcctccgaccagatctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG

Basic information

species Zea mays
transcript GRMZM2G138128_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138128_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g36710.1 (Oryza sativa), 3'ss of exon 1
gtagcaaaccctccgtccctcccatcgatcctccgaccagatctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG
              || ||   || |    | |   |    || |   |  |||   |  | || || || | |     | ||||     | | |||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
--------------gtacccatcacctcctcgcgacctctctccccatacacccccatagatctcatctcgccggtgggggattcga---ttcgcagGTCGGTGCGCAAGATCGCTAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCGGACGCCCGCGTGCTCATCAACCGCGCGCGGGTCGAG

upper sequence: GRMZM2G138128_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G23580.1 (Glycine max), 3'ss of exon 1
-gtagcaaaccctc-cgtccctcccatcgatcctccgaccagatctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtc---tccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG
  || | ||  ||  |  |   |   |  |  |   ||  | |  |  | |    ||||      | | |||    |||| || ||  ||||   | | |||||| ||| | ||||| | |   ||||||  |||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||| | || || || |||
gctaacgaatactaacaactaacatttgcaatcaaagaagaaaaataacaaaaaacgacgtcgtttcaaatcg--aaccctgattttgtgtcgttttcgcagGTCGGTGAGGAAGATAGTGAATCTGGACGACCACATTGCGCTGGCCTGCGCGGGGCTGAAGGCCGACGCACGCGTGCTCATAAACAGGGCACGTGTGGAG

upper sequence: GRMZM2G138128_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G05190.1 (Glycine max), 3'ss of exon 1
--------gtagcaaaccctccgtccctcccatcgatcctccgaccagatctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG
         |   |   |  |||| ||    || | |      |||| |            ||  ||||| |||   | ||||    |  |    || | | |||||| ||| | ||||| | |   ||||||| |||||| || ||||||||||||||||||||||| |||||||| |||||||| ||| | || || || |||
caactcaccttatatctctgccgttcccttaataggtgt--aaaccaaaaaaaaacgacgtcgtttcaaattaaa--cactgatttggtgtgt-cgttttcgcagGTCGGTGAGGAAGATTGTGAATCTGGACAACCACATTGCGCTGGCATGCGCGGGGCTGAAGGCCGACGCACGTGTGCTCATAAACAGGGCACGTGTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308680|gb|FL018772.1|FL018772
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGNCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306653|gb|FL018758.1|FL018758
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304630|gb|FL018750.1|FL018750
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308683|gb|FL018775.1|FL018775
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308689|gb|FL018781.1|FL018781
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304626|gb|FL018746.1|FL018746
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|32914285|gb|CF019097.1|CF019097
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGATTTTTT                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211219953|gb|FL188165.1|FL188165
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|19770273|gb|BQ034994.1|BQ034994
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304625|gb|FL018745.1|FL018745
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306651|gb|FL018756.1|FL018756
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304628|gb|FL018748.1|FL018748
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306656|gb|FL018761.1|FL018761
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|78111886|gb|DV530283.1|DV530283
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304627|gb|FL018747.1|FL018747
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308686|gb|FL018778.1|FL018778
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306652|gb|FL018757.1|FL018757
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211037504|gb|FL188134.1|FL188134
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308687|gb|FL018779.1|FL018779
EST:     GTCGTCCTCGGWGTGGAGAAGAAGKCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCTTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304621|gb|FL018741.1|FL018741
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GYCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304633|gb|FL018753.1|FL018753
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304635|gb|FL018755.1|FL018755
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211310710|gb|FL018786.1|FL018786
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306663|gb|FL018768.1|FL018768
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGG
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGG
EST: gi|211306664|gb|FL018769.1|FL018769
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306665|gb|FL018770.1|FL018770
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGATTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304622|gb|FL018742.1|FL018742
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAANCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACA
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACA
EST: gi|211304632|gb|FL018752.1|FL018752
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308693|gb|FL018785.1|FL018785
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|76014708|gb|DT941878.1|DT941878
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211310711|gb|FL018787.1|FL018787
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308688|gb|FL018780.1|FL018780
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306662|gb|FL018767.1|FL018767
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306657|gb|FL018762.1|FL018762
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|148952506|gb|EC898333.2|EC898333
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306658|gb|FL018763.1|FL018763
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304623|gb|FL018743.1|FL018743
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|148966564|gb|EE017591.2|EE017591
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306660|gb|FL018765.1|FL018765
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211310713|gb|FL018789.1|FL018789
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211306661|gb|FL018766.1|FL018766
EST:     GTCGTCCTCGGTGTGGAGAARAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|40336967|gb|CK371037.1|CK371037
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|149051858|gb|EE155986.2|EE155986
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304634|gb|FL018754.1|FL018754
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|91873762|gb|EB403719.1|EB403719
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211304624|gb|FL018744.1|FL018744
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211308685|gb|FL018777.1|FL018777
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|71432817|gb|DR813867.1|DR813867
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|67039736|gb|CO465991.1|CO465991
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
EST: gi|211222019|gb|FL188175.1|FL188175
EST:     GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC
genomic: GTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 4

AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACGGACACCGTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG


Block sizes: 32 (upstream exon), 24 (downstream exon)
Score: 6

AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACGGACACCGTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG


Block sizes: 40 (upstream exon), 28 (downstream exon)
Score: 12

AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACGGACACCGTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 11

AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACGGACACCGTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaacc ... gtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG
                                            tgtctcccc  CT-rich tract
                 aaactaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagcaaaccctccgtccctcccatcgatcctccgaccagatctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtctccccagGTCCGTGCGCAAGATCGCGTGCCTGGACACCCACATCGCTCTGGCATGCGCGGGGCTGAAGGCGGACGCACGCGTGCTCATCAACCGCGCGCGGGTCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG