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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggactctgtcatgagtgttacaatgtgtgttcttccttctcctcgaagaccaattcaaatcaacttaaccggagaacttgtattgtaatccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGA

Basic information

species Zea mays
transcript GRMZM2G137930_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467853|gb|CF244902.1|CF244902
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211293810|gb|FL235622.1|FL235622
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTA
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTA
EST: gi|211300235|gb|FL235671.1|FL235671
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211293814|gb|FL235626.1|FL235626
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCC-GCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211298091|gb|FL235655.1|FL235655
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211300229|gb|FL235665.1|FL235665
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGAT
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaagaccaattcaaatcaacttaaccggagaacttgtattgtaatccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGA
                   acttaac  putative branch site (score: 3)
                                             tcctt  putative PPT
        aattcaaat  TA-rich tract