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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctgtctccggtccagtgcaatcttgtcttctttttggatttgtgatcgacgatgatgtagtatgtagcaaagtgtttgcttggcatgtgggctcaaggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCCCCGGGCGGACCCACCTGTTCGTGCCGGGCCCCGTGAACATCCCGGACCC

Basic information

species Zea mays
transcript GRMZM2G137868_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137868_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g39300.2 (Oryza sativa), 3'ss of exon 1
gtacgcctgtctccggtccagtgcaatcttgtcttctttttggatttgtgatcgacgatgatgtagtatgtagcaaagtgtttgcttggcatgtgggctcaaggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCCCCGGGCGGACCCACCTGTTCGTGCCGGGCCCCGTGAACATCCCGGACCC-------------------------
                                                                                                        |  |||     || || |  ||| |||  ||||        |||            | |   |  |    |    ||  |   ||   ||    |       | |            ||||||||||||||||||||| || ||||||| ||||||||||||||| || || ||||||||||||||||                          
-----------------------------------------------------------------------------------------------------tttcagaaggttatattaggcaggagtttttattgct-------gtgggacgaataattattttttgtttgggcctgatgggcctttgtgtgtgtgtgtgtgggcagG----------GAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148957248|gb|EC903268.2|EC903268
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|71764610|gb|DR962547.1|DR962547
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGGGGAACTACGTGAATGGC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGG-ACTACGTGTATGGC
EST: gi|78109038|gb|DV527455.1|DV527455
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|76294078|gb|DV033646.1|DV033646
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCATCTAGCTACCACAG                         TACCAGCAGCAAGAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|71437747|gb|DR818797.1|DR818797
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|148959061|gb|EE010556.2|EE010556
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|93014857|gb|EB640377.1|EB640377
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|149075108|gb|EE163598.2|EE163598
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|33467631|gb|CF244680.1|CF244680
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|148938194|gb|EC882479.2|EC882479
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|76918900|gb|DV167499.1|DV167499
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTA-C-C--                         -A-CAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|37418744|gb|CF647044.1|CF647044
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCATCTAGCTACCACAG                         TACCAGCAGCAAGAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|211445898|gb|FL403745.1|FL403745
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAG------C--                         TACCA-CAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|78115967|gb|DV534355.1|DV534355
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCATCTAGCTACCACAG                         TACCAGCAGCAAGAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|211376270|gb|FL028048.1|FL028048
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|211501487|gb|FL028051.1|FL028051
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|74243688|gb|DT651602.1|DT651602
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|149008924|gb|EE041144.2|EE041144
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTA-C-C--                         -A-CAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCCCCGGGCGGACCCACCTGTTCGTGCCGGGCCCCGTGAACATCCCGGACCC
               cgctgac  putative branch site (score: 3)