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...tctcttccagcgatagggtatattccacttgtgccggttaaaggccaccaggatcagcagccagtggtcacctcacccactcgtgttggttgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGCCACCGGCGTGGCTCCAGCTCCTCTCCCACATGTCAGAGTGCATCATGG
species | Zea mays |
transcript | GRMZM2G137409_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAG GTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGEST: gi|211498483|gb|FL245228.1|FL245228
genomic: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAGgtgcggtgat ... tgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGG
EST: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGTCCACACGGAGCTGCGAG GTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGEST: gi|6672259|gb|AW282425.1|AW282425
genomic: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAGgtgcggtgat ... tgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGG
EST: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAG GTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGEST: gi|148957404|gb|EC903459.2|EC903459
genomic: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAGgtgcggtgat ... tgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGG
EST: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAG GTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGEST: gi|71419166|gb|DR804674.1|DR804674
genomic: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAGgtgcggtgat ... tgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGG
EST: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAG GTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGG
genomic: TCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAGgtgcggtgat ... tgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGG
caccaggatcagcagccagtggtcacctcacccactcgtgttggttgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGCCACCGGCGTGGCTCCAGCTCCTCTCCCACATGTCAGAGTGCATCATGG
acctcac putative branch site (score: 50)
ttgctct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcttccagcgatagggtatattccacttgtgccggttaaaggccaccaggatcagcagccagtggtcacctcacccactcgtgttggttgctctgcagGTGTTTGTAGGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGCCACCGGCGTGGCTCCAGCTCCTCTCCCACATGTCAGAGTGCATCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - -tgtgccg
- - - - - - - - - - - - - - - - - - - - - - ccaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt