1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgtgagctgatctcctctcagttctcactcagatccctatctgctaatgcgcattctaatcgcgaccgtgtttcttcgcttaataacaacctgtgcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAACTGGTACGCGCTGCTAGCTGCAGCCACACACAGCACGCTCTCATATTCC
species | Zea mays |
transcript | GRMZM2G136831_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAAEST: gi|76933211|gb|DV173372.1|DV173372
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCTAA ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCAGAGGGAACAEST: gi|78119598|gb|DV537982.1|DV537982
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACA
EST: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAAEST: gi|78113749|gb|DV532138.1|DV532138
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
cgcattctaatcgcgaccgtgtttcttcgcttaataacaacctgtgcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAACTGGTACGCGCTGCTAGCTGCAGCCACACACAGCACGCTCTCATATTCC
taataac putative branch site (score: 15)
ttaataacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgagctgatctcctctcagttctcactcagatccctatctgctaatgcgcattctaatcgcgaccgtgtttcttcgcttaataacaacctgtgcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAACTGGTACGCGCTGCTAGCTGCAGCCACACACAGCACGCTCTCATATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG