1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcgtgtcttgtcctgattttgtcctccgcatctgtctgcgtcgttaggccactctcggttgctttcttttcttgacacattccttctttgcttgtgtttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
species | Zea mays |
transcript | GRMZM2G136293_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGC GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGEST: gi|211291472|gb|FL225663.1|FL225663
genomic: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGCgtgcgtgtct ... tttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
EST: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGC GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGEST: gi|71437550|gb|DR818600.1|DR818600
genomic: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGCgtgcgtgtct ... tttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
EST: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGC GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGEST: gi|74243001|gb|DT650915.1|DT650915
genomic: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGCgtgcgtgtct ... tttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
EST: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGC GTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
genomic: ATGTCCTCGAGGACGAGCACCTCGAGGACTGCCATTGGTCCGCCTCATGCgtgcgtgtct ... tttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
ctctcggttgctttcttttcttgacacattccttctttgcttgtgtttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
tcttgac putative branch site (score: 14)
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgtcttgtcctgattttgtcctccgcatctgtctgcgtcgttaggccactctcggttgctttcttttcttgacacattccttctttgcttgtgtttgttgcagGTGATCACCAAGGAATCCCTCTTGGCAGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA