1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcatcacatttaccttttcattgtaccaaatcatttttccaatatgttattttgtccgattcttgttttggccacttctaaataattcacaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAATAAGGGACACTGACAGCCAAAGGTGCTCAAGTACGTGTGCTACTTCCT
species | Zea mays |
transcript | GRMZM2G135816_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|76293057|gb|DV032625.1|DV032625
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|71449821|gb|DR830871.1|DR830871
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|211434925|gb|FK975629.1|FK975629
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGGCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCEST: gi|211434923|gb|FK975627.1|FK975627
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCC
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|211434917|gb|FK975621.1|FK975621
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|78090418|gb|DV518792.1|DV518792
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|211434922|gb|FK975626.1|FK975626
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|148939358|gb|EC883884.2|EC883884
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|148930609|gb|EE285291.2|EE285291
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|211434920|gb|FK975624.1|FK975624
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|31350206|gb|CD434563.1|CD434563
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: GCGACGCTGTC-TCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|60672651|gb|DN475349.1|DN475349
genomic: GCGACGCTG-CGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|62525817|gb|DN828465.1|DN828465
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|91054282|gb|EB164700.1|EB164700
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|71434991|gb|DR816041.1|DR816041
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|149048406|gb|EE048314.2|EE048314
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|32859388|gb|CD999069.1|CD999069
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCTGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAEST: gi|148946522|gb|EC891834.2|EC891834
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
atgttattttgtccgattcttgttttggccacttctaaataattcacaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAATAAGGGACACTGACAGCCAAAGGTGCTCAAGTACGTGTGCTACTTCCT
ttctaaa putative branch site (score: 2)
taaataattcacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatcacatttaccttttcattgtaccaaatcatttttccaatatgttattttgtccgattcttgttttggccacttctaaataattcacaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCAATAAGGGACACTGACAGCCAAAGGTGCTCAAGTACGTGTGCTACTTCCT
atgcatc
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