1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggtgcgcgctaccgcctccctccctctcccgtcgatgcgatcttctagctccagattgcatctccttcttcttcctccttcggccagggcagaatggctcctcgcgggctgcggttttgtgctcaaaggcgcgatctttacgctcgggatggcttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATTTGCTTGGGAGTGAGAGGAGAGAGCGAGTAATAGGGTGAAGGAGTCTTG
species | Zea mays |
transcript | GRMZM2G135568_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|211033698|gb|FL002059.1|FL002059
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|211036134|gb|FL002061.1|FL002061
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|149083911|gb|EE173287.2|EE173287
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|211036133|gb|FL002060.1|FL002060
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|211033697|gb|FL002058.1|FL002058
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|149061139|gb|EE157399.2|EE157399
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|211036135|gb|FL002062.1|FL002062
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AG-MCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATEST: gi|71757755|gb|DR955692.1|DR955692
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
ctgcggttttgtgctcaaaggcgcgatctttacgctcgggatggcttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATTTGCTTGGGAGTGAGAGGAGAGAGCGAGTAATAGGGTGAAGGAGTCTTG
cttcgtt CT-rich tract
atcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgcgcgctaccgcctccctccctctcccgtcgatgcgatcttctagctccagattgcatctccttcttcttcctccttcggccagggcagaatggctcctcgcgggctgcggttttgtgctcaaaggcgcgatctttacgctcgggatggcttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGATTTGCTTGGGAGTGAGAGGAGAGAGCGAGTAATAGGGTGAAGGAGTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG