1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcccgcctttcccgatgcttctccattcgagtgcgggagtggcagactggattccctgggggggattcgtttcgacggactgatctgatgactcctcccagcaccctcgtctgacaaggtgttgttcgccgacttggtgtgcagCCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTTTCTCCAGCCCCTGCGTCGTGGGCCACGAGATCACCGGCGAGGTCGTCGA
species | Zea mays |
transcript | GRMZM2G135526_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCCACATGCCGCGACCCAAGGCCGGCGAGCTCCTCATCAAGACCAAAG CCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTTEST: gi|91872889|gb|EB402846.1|EB402846
genomic: GTTCCACATGCCGCGACCCAAGGCCGGCGAGCTCCTCATCAAGACCAAAGgtcccgcctt ... tggtgtgcagCCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTT
EST: CATCAAGACCAAAG CCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTTEST: gi|76012940|gb|DT940110.1|DT940110
genomic: CATCAAGACCAAAGgtcccgcctt ... tggtgtgcagCCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTT
EST: GTTCCACATGCCGCGACCCAAGGCCGGCGAGCTCCTCATCAAGACCAAAG CCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTT
genomic: GTTCCACATGCCGCGACCCAAGGCCGGCGAGCTCCTCATCAAGACCAAAGgtcccgcctt ... tggtgtgcagCCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTT
gactcctcccagcaccctcgtctgacaaggtgttgttcgccgacttggtgtgcagCCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTTTCTCCAGCCCCTGCGTCGTGGGCCACGAGATCACCGGCGAGGTCGTCGA
gtctgac putative branch site (score: 38)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcccgcctttcccgatgcttctccattcgagtgcgggagtggcagactggattccctgggggggattcgtttcgacggactgatctgatgactcctcccagcaccctcgtctgacaaggtgttgttcgccgacttggtgtgcagCCTGCGGGGTGTGCCACTCCGACCTCCACGTCCTGAAAGGCGAGCTCCCTTTCTCCAGCCCCTGCGTCGTGGGCCACGAGATCACCGGCGAGGTCGTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA