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...gtctgacattatacaggttatgcacttgagttttagcctttttttggtttctaatgcttcaacagtactgctgttactaatgtccatatgtggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTTGAGCCCACCTTTTATCAGGAAGCATCTAGTAGTTTACCAGGAGATGGAC
species | Zea mays |
transcript | GRMZM2G135256_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAG GTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTTEST: gi|149087578|gb|EE176975.2|EE176975
genomic: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAGgtgatcaagt ... tggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTT
EST: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAG GTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTTEST: gi|94476791|gb|EB705749.1|EB705749
genomic: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAGgtgatcaagt ... tggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTT
EST: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAG GTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTTEST: gi|149106588|gb|EE188481.2|EE188481
genomic: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAGgtgatcaagt ... tggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTT
EST: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAG GTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTT
genomic: GGGGCGTGCCCGTGCTCTTTATTCCCGGCAACGGAGGAAGTTACAAGCAGgtgatcaagt ... tggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTT
ggtttctaatgcttcaacagtactgctgttactaatgtccatatgtggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTTGAGCCCACCTTTTATCAGGAAGCATCTAGTAGTTTACCAGGAGATGGAC
tactaat putative branch site (score: 93)
ttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgacattatacaggttatgcacttgagttttagcctttttttggtttctaatgcttcaacagtactgctgttactaatgtccatatgtggaatctagGTTCGGTCATTGGCTGCAGAATCTTTTCGAGCTTATCAGAATGGTCCACTTGAGCCCACCTTTTATCAGGAAGCATCTAGTAGTTTACCAGGAGATGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -tgacatt
- - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatatg