Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211047254|gb|FL125328.1|FL125328EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAAGAGAGC
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGA-GAGAGC
EST:
gi|211044290|gb|FL125313.1|FL125313EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST:
gi|211044299|gb|FL125322.1|FL125322EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST:
gi|211044292|gb|FL125315.1|FL125315EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST:
gi|78113115|gb|DV531509.1|DV531509EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST:
gi|211047249|gb|FL125323.1|FL125323EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST:
gi|211047250|gb|FL125324.1|FL125324EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST:
gi|211044297|gb|FL125320.1|FL125320EST: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaagatattagaataacctttttgtcaacattgttactatatgttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATGTAAGAGATACCAGTGCTTCATTTATGC
atattagaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcttttatccagagctttgttagtttatttcagtttatcagcactaacaagatattagaataacctttttgtcaacattgttactatatgttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATGTAAGAGATACCAGTGCTTCATTTATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA