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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcctctgccctctccctgcgtgccttcaattgaacatgtgccgccgccgatcgccgcctgatctgacgacgaggcttcctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA

Basic information

species Zea mays
transcript GRMZM2G134708_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134708_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g44340.1 (Oryza sativa), 3'ss of exon 1
gtacgtgcctctgccctctccctgcgtgccttcaattgaacatgtgccgccgc-cgatcgccgcctgatctgac----------gacgag---gcttcc-------tgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA
|||     | |  |||||  |||     |  |  | |   |   ||||  | |  |  |  | | | |||| ||          || ||      || |       |  | |||||| ||||| ||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| | 
gta-acatcgccaccctcctcctctactctcttcaatacgcgcttgccttctcatggccatcacatcatctcactcacacgatcgatgaactcattttcattttgatttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTCGCCATCATCTCCAAGGAATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211139780|gb|FL086553.1|FL086553
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139782|gb|FL086555.1|FL086555
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|149089132|gb|EE178315.2|EE178315
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|71445023|gb|DR826073.1|DR826073
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|84980717|gb|DW531066.1|DW531066
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|71422582|gb|DR805773.1|DR805773
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|50327427|gb|CO522553.1|CO522553
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|76931161|gb|DV172672.1|DV172672
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|78077167|gb|DV505601.1|DV505601
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139774|gb|FL086547.1|FL086547
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148931363|gb|EC874265.2|EC874265
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|149111140|gb|EE294635.2|EE294635
EST:     TGAAGGCTAGGCACTTCAAGTAAGTCATCCTCGGCGGAGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGACAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|71439293|gb|DR820343.1|DR820343
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|71298889|gb|DR785439.1|DR785439
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148951661|gb|EC897406.2|EC897406
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138836|gb|FL086537.1|FL086537
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148939718|gb|EC884396.2|EC884396
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139777|gb|FL086550.1|FL086550
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|88751027|gb|DY535168.1|DY535168
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGAGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGAGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138837|gb|FL086538.1|FL086538
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138840|gb|FL086541.1|FL086541
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138844|gb|FL086545.1|FL086545
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|149111386|gb|EE294890.2|EE294890
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139778|gb|FL086551.1|FL086551
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139786|gb|FL086559.1|FL086559
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138839|gb|FL086540.1|FL086540
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|149084652|gb|EE174137.2|EE174137
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138843|gb|FL086544.1|FL086544
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148941238|gb|EC886132.2|EC886132
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148936977|gb|EC881144.2|EC881144
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138838|gb|FL086539.1|FL086539
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148940672|gb|EC885484.2|EC885484
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|84980996|gb|DW531345.1|DW531345
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139779|gb|FL086552.1|FL086552
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148937253|gb|EC881434.2|EC881434
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148932994|gb|EE285869.2|EE285869
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139781|gb|FL086554.1|FL086554
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|33467502|gb|CF244551.1|CF244551
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|148934201|gb|EC878222.2|EC878222
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139776|gb|FL086549.1|FL086549
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139784|gb|FL086557.1|FL086557
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139787|gb|FL086560.1|FL086560
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|149206152|gb|ES701748.1|ES701748
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211139775|gb|FL086548.1|FL086548
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138842|gb|FL086543.1|FL086543
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
EST: gi|211138845|gb|FL086546.1|FL086546
EST:     TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCG                         GGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC
genomic: TGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 37

CGCCCTTCGCGATCGTGTCGTTTCTTCCCGCAGCCTGCCTGCGTGTGGGGTGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 547

CGCCCTTCGCGATCGTGTCGTTTCTTCCCGCAGCCTGCCTGCGTGTGGGGTGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 859

CGCCCTTCGCGATCGTGTCGTTTCTTCCCGCAGCCTGCCTGCGTGTGGGGTGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 276

CGCCCTTCGCGATCGTGTCGTTTCTTCCCGCAGCCTGCCTGCGTGTGGGGTGATGGCTAGGCACTTCAAGTACGTCATCCTCGGCGGCGGTGTCGCGGCGgtacgtgcct ... ctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgtgccgccgccgatcgccgcctgatctgacgacgaggcttcctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA
                           atctgac  putative branch site (score: 276)
                                         cttcctgc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtgcctctgccctctccctgcgtgccttcaattgaacatgtgccgccgccgatcgccgcctgatctgacgacgaggcttcctgcgcgcagGGGTACGCGGCGAGGGAGTTCGCCAAGCAGGGCGTCAACCCCGGCGAGCTCGCCATCATCTCCAAGGAACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA