1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtagatcttttggtttctttatacagatgtacatatacccttttatcttagaatgacagaattctcattatacatttgtacatatgttttatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT
species | Zea mays |
transcript | GRMZM2G134613_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAAEST: gi|16925527|gb|BM078595.1|BM078595
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGATAAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAAEST: gi|67025573|gb|CO454322.1|CO454322
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAAEST: gi|84980814|gb|DW531163.1|DW531163
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAAEST: gi|5761920|gb|AI966893.1|AI966893
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAAEST: gi|116828492|gb|EC857917.1|EC857917
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: GAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCGCCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAGTACCCTGACAGAAEST: gi|37374696|gb|CF623730.1|CF623730
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAAEST: gi|67040113|gb|CO466368.1|CO466368
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
EST: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCG AAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
genomic: AAGGAGGAGGAGGATGGCGAGGAGTTCGTTCAAGTTGGAGCACCCCTTCGgttcgtctct ... tatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAA
atcttagaatgacagaattctcattatacatttgtacatatgttttatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT
attatacatttgtaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagatcttttggtttctttatacagatgtacatatacccttttatcttagaatgacagaattctcattatacatttgtacatatgttttatatcgcagAAAGGAGGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA