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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgtctctttcgctctcccacgccgcgccgtctctcccttgaatcaccgcgaaagttgtcgcgtgctcgtgaggcgctctgaaacgttctggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGGTAAGA

Basic information

species Zea mays
transcript GRMZM2G134389_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134389_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g10650.1 (Oryza sativa), 3'ss of exon 1
-------gtaagcgtctctttcgctctcccac--gccgcgccgtctctccctt----gaatcaccgcgaa---agttgtcgcgtgctcgtgaggcgc---tctgaaacgttctggcg----------caccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGGTAAGA
        |     ||||| || |||||   |  ||  |  ||||| |  | |    |  |      |      ||||   || |   ||| |||||   |  |    |||||| ||          || ||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||      
gtgaggaatttttctctctctctctctctagctagctacctcgtctgttgcatctaggggttgggttgggttgggttgcttcgcgggtgtgtggcgcgtgttcgtgtggttctgacgagggtgacgtcatcagGTACCTGTGCCCGGAGCCGTACCCGGAGACGAACGCGGAGTTCCTCGCCAAGAACGGGATCAAGCTCCACCAGTTCGGAATCGAGGGGCGCAAG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211385287|gb|FL301234.1|FL301234
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211387909|gb|FL301240.1|FL301240
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|4966628|gb|AI691484.1|AI691484
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGA
EST: gi|211387917|gb|FL301248.1|FL301248
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211385281|gb|FL301228.1|FL301228
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211385286|gb|FL301233.1|FL301233
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGC-GTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211385283|gb|FL301230.1|FL301230
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211387916|gb|FL301247.1|FL301247
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211387906|gb|FL301237.1|FL301237
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: gi|211385288|gb|FL301235.1|FL301235
EST:     GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT                         GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA