1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcgtctctttcgctctcccacgccgcgccgtctctcccttgaatcaccgcgaaagttgtcgcgtgctcgtgaggcgctctgaaacgttctggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG
species | Zea mays |
transcript | GRMZM2G134389_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387917|gb|FL301248.1|FL301248
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|5555286|gb|AI881237.1|AI881237
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|5555280|gb|AI881231.1|AI881231
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211385286|gb|FL301233.1|FL301233
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGC-GTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387909|gb|FL301240.1|FL301240
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|5555378|gb|AI881329.1|AI881329
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|4966628|gb|AI691484.1|AI691484
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAEST: gi|211385281|gb|FL301228.1|FL301228
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|93281321|gb|EB673585.1|EB673585
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387907|gb|FL301238.1|FL301238
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGATCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|50339825|gb|CO534951.1|CO534951
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211385282|gb|FL301229.1|FL301229
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211385287|gb|FL301234.1|FL301234
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387916|gb|FL301247.1|FL301247
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387914|gb|FL301245.1|FL301245
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|78087468|gb|DV515861.1|DV515861
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387906|gb|FL301237.1|FL301237
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211387912|gb|FL301243.1|FL301243
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|211385288|gb|FL301235.1|FL301235
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAEST: gi|76294316|gb|DV033884.1|DV033884
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
EST: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
genomic: GAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaagcgtct ... ggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtctctttcgctctcccacgccgcgccgtctctcccttgaatcaccgcgaaagttgtcgcgtgctcgtgaggcgctctgaaacgttctggcgcaccagGTACCTGTGCCCGGAGCCGTACCCAGAGACGAACACGGAGTTCCTCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG
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