1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtatggtcatgagctaatagctggggaatacaaaagtagaagtcaaagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
species | Zea mays |
transcript | GRMZM2G134176_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCASCAAAGTATGEST: gi|211011838|gb|FL066264.1|FL066264
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: CGACAGCNCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
aagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
gcctgat putative branch site (score: 146)
ttttt putative PPT
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtcatgagctaatagctggggaatacaaaagtagaagtcaaagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -catgagc
- - - - - - - - - -gctgggg
- - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg