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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatggtcatgagctaatagctggggaatacaaaagtagaagtcaaagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG

Basic information

species Zea mays
transcript GRMZM2G134176_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134176_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g70140.1 (Oryza sativa), 3'ss of exon 1
----gtatggtcatgagctaatagctggggaatacaaaagtagaagtcaaagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
    | ||   |||  | |  ||    |  |    |  |  ||  |  |   |||  || |      || |     || ||||  | ||   | || ||||||||||| || ||||||||||| || ||||||||||| ||||||||||||||
gttcgcatcaccatatggttttaaactgaaagccaagcaagagttgcgatgcattggaaag-attgttggtgtcatct-attgattgtg--ctctgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG

upper sequence: GRMZM2G134176_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S16_326V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatggtcatgagctaatagctggggaa---tacaaaagtagaagtcaaagattacaatgtgaaagtgctactgcctgattggct------ttggtttttggtt--ggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
         |||    |  | | |   |   | || ||     | |     |||   || |  |  || |||   ||||   | |      |||| |     |     ||| ||  ||||| |||||||| ||||||||||||||| | |||||||| ||
---------tgactgtactgttagaccacctttcacaatctttattttt--atttttattttcatttgatacattctgaagagataaagtgttggctgccaatccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229682|gb|CF919995.1|CF919995
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011836|gb|FL066262.1|FL066262
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|19822046|gb|BQ048070.1|BQ048070
EST:     CTTCTGTCCCTACTAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71305841|gb|DR789046.1|DR789046
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|76288098|gb|DV027666.1|DV027666
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|78078206|gb|DV506621.1|DV506621
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|5929011|gb|AW056303.1|AW056303
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|148935183|gb|EC879220.2|EC879220
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|31348575|gb|CD432932.1|CD432932
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|18659337|gb|BM500284.1|BM500284
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011839|gb|FL066265.1|FL066265
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|74243460|gb|DT651374.1|DT651374
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183787|gb|FL226959.1|FL226959
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|92088246|gb|EB484477.1|EB484477
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGTCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211181392|gb|FL226953.1|FL226953
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183786|gb|FL226958.1|FL226958
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCASCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211181395|gb|FL226956.1|FL226956
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|31909696|gb|CD651049.1|CD651049
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183797|gb|FL226969.1|FL226969
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCCTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71596377|gb|DR907128.1|DR907128
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183791|gb|FL226963.1|FL226963
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211181394|gb|FL226955.1|FL226955
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|148957852|gb|EC904003.2|EC904003
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCC-GAAGATGCAGTTCATCACCAAAGTATG
EST: gi|19822034|gb|BQ048058.1|BQ048058
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|78104812|gb|DV523230.1|DV523230
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|76917766|gb|DV166996.1|DV166996
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|15499307|gb|BI595820.1|BI595820
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71333059|gb|DR803564.1|DR803564
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|148950957|gb|EC896595.2|EC896595
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|60338191|gb|DN205164.1|DN205164
EST:     AGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: AGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|76917765|gb|DV166995.1|DV166995
EST:     GTTCGTCATCGATATCCGCCTGCCCG                         GGGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: GTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|50336276|gb|CO531402.1|CO531402
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183796|gb|FL226968.1|FL226968
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGARCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|60394349|gb|DN227219.1|DN227219
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|29576715|gb|CB616827.1|CB616827
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GNGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71761684|gb|DR959621.1|DR959621
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011837|gb|FL066263.1|FL066263
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|67021220|gb|CO449969.1|CO449969
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011838|gb|FL066264.1|FL066264
EST:     CGACAGCNCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|78104811|gb|DV523229.1|DV523229
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
                         gcctgat  putative branch site (score: 4)
                                         ttttt  putative PPT
                                         ttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggtcatgagctaatagctggggaatacaaaagtagaagtcaaagattacaatgtgaaagtgctactgcctgattggctttggtttttggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG