1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtttcgtcctagatatagcaagtacatggtgctgttatttctttttcaatatttgctacccatgtgtctgatttatccttcccttctatgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGACGGTGGACCTCTACGTCCCCAGGAAGTG
species | Zea mays |
transcript | GRMZM2G134109_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211239565|gb|FL220655.1|FL220655
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211244033|gb|FL220677.1|FL220677
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211241800|gb|FL220666.1|FL220666
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|84980738|gb|DW531087.1|DW531087
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|166615631|gb|EG195784.1|EG195784
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211235091|gb|FL220624.1|FL220624
genomic: CTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTACTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|9742525|gb|BE518637.1|BE518637
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGCTAEST: gi|211241802|gb|FL220668.1|FL220668
genomic: CGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGT-CCCCAACCATCATCATGCAGAACGAGGAGGG-TA
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211239555|gb|FL220645.1|FL220645
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211244035|gb|FL220679.1|FL220679
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211239552|gb|FL220642.1|FL220642
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211244039|gb|FL220683.1|FL220683
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211241790|gb|FL220656.1|FL220656
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CG-CG-CGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211237336|gb|FL220639.1|FL220639
genomic: CGCCGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CG-CG-CGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|32829876|gb|CD969554.1|CD969554
genomic: CGCCGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAAEST: gi|33098495|gb|CF058455.1|CF058455
genomic: CGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCC-AACCATCATCATGCAGAACGAGGAGGGTAA
EST: CCGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAAEST: gi|32838780|gb|CD978461.1|CD978461
genomic: CCGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCC-AACCATCATCATGCAGAACGAGGAGGGTAA
EST: CCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAAEST: gi|211237328|gb|FL220631.1|FL220631
genomic: CCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCC-AACCATCATCATGCAGAACGAGGAGGGTAA
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|211244040|gb|FL220684.1|FL220684
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|32829918|gb|CD969596.1|CD969596
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTTGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAAEST: gi|211244030|gb|FL220674.1|FL220674
genomic: CGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGT-CCCCAACCATCATCATGCAGAACGAGGAGGGTAA
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|32828852|gb|CD968530.1|CD968530
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: CGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAAEST: gi|211239560|gb|FL220650.1|FL220650
genomic: CGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGT-CCCCAACCATCATCATGCAGAACGAGGAGGGTAA
EST: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGEST: gi|18649857|gb|BM498676.1|BM498676
genomic: AGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAG
EST: GTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAAEST: gi|33093009|gb|CF053003.1|CF053003
genomic: GTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGT-CCCCAACCATCATCATGCAGAACGAGGAGGGTAA
EST: CGCCGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAG TTGCTGCTGCGGTAGTCCCCCAACCATCATCATGCAGAACGAGGAGGGTAA
genomic: CGCCGCCGCAGTTGTCTTCGGTCTTCCGTGCTCACCTTCGAGAGATCAAGgtccgtgtgc ... tgctgttcagTTGCTGCTGCGGTAGTCCCC-AACCATCATCATGCAGAACGAGGAGGGTAA
tttcaatatttgctacccatgtgtctgatttatccttcccttctatgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGACGGTGGACCTCTACGTCCCCAGGAAGTG
gtctgat putative branch site (score: 1092)
tttatccttcccttct CT-rich tract
tgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttcgtcctagatatagcaagtacatggtgctgttatttctttttcaatatttgctacccatgtgtctgatttatccttcccttctatgctgttcagTTGCTGCTGCGGTAGTCCCCAACCATCATCATGCAGAACGAGGAGGGTAAGACGGTGGACCTCTACGTCCCCAGGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - -ggtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctacc