1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtcaagccgtgatcggtcaaccaatccctgctctatcaaatggaaaatctgctcccgacctcacagctgaaaaaaggctacctcttgggattcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACTGACGATACCGGATCACACGACCGTGCACGAGGCTTGTCGGAGGATGGCA
species | Zea mays |
transcript | GRMZM2G133621_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCAC GCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACTEST: gi|211454144|gb|FL044270.1|FL044270
genomic: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatc ... ttcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
EST: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCAC GCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACTEST: gi|211454143|gb|FL044269.1|FL044269
genomic: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatc ... ttcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
EST: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCAC GCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
genomic: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatc ... ttcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
aatctgctcccgacctcacagctgaaaaaaggctacctcttgggattcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACTGACGATACCGGATCACACGACCGTGCACGAGGCTTGTCGGAGGATGGCA
acctcac putative branch site (score: 3)
ttcttttc putative PPT
tgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaagccgtgatcggtcaaccaatccctgctctatcaaatggaaaatctgctcccgacctcacagctgaaaaaaggctacctcttgggattcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACTGACGATACCGGATCACACGACCGTGCACGAGGCTTGTCGGAGGATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- caagccg
- - - - - - - - -caaccaa
- - - - - - - - - - - - - cctgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaag