1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagtaaaagtatactaagccgcagggcaccacaacgcaacacgtggtgcctgcctgcctccttccttgttcgctttgcggcgcgagcgttttgtctgttgttgtctcccttgggaccggcgcgtccggctggctcactaccactaacgtgttgttgcctgccttgtgcggcgcccgtggttcgcattgcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGGGACGGCGCCACCTTCCTCCTCCCCGAGCTCCTCCAGCGCA
species | Zea mays |
transcript | GRMZM2G133331_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGEST: gi|71448696|gb|DR829746.1|DR829746
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGEST: gi|76931345|gb|DV172707.1|DV172707
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGEST: gi|93017001|gb|EB642521.1|EB642521
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGEST: gi|71311268|gb|DR791947.1|DR791947
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGEST: gi|76923172|gb|DV169368.1|DV169368
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGEST: gi|71330993|gb|DR802318.1|DR802318
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
EST: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAG CAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
genomic: CGCTCTGATCCGTGCCCGATGCATCGTCAGCCATCTCCTCACGCCTTCAGgtagtaaaag ... gcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAG
ctaacgtgttgttgcctgccttgtgcggcgcccgtggttcgcattgcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGGGACGGCGCCACCTTCCTCCTCCCCGAGCTCCTCCAGCGCA
cactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaaaagtatactaagccgcagggcaccacaacgcaacacgtggtgcctgcctgcctccttccttgttcgctttgcggcgcgagcgttttgtctgttgttgtctcccttgggaccggcgcgtccggctggctcactaccactaacgtgttgttgcctgccttgtgcggcgcccgtggttcgcattgcgtttgcagCAGCAGCGGCAGCTGGGCGGAGCAGGGCGCGGGCGGGTACCGCCACGGCAGGGACGGCGCCACCTTCCTCCTCCCCGAGCTCCTCCAGCGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC