1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgaccatataggtgaactgcaagacatgatcccagtttgttcgcttccattttaaatcttgtgactgctgtcaataaaacaggttttttttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTATAACT
species | Zea mays |
transcript | GRMZM2G133082_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|26557862|gb|CA830097.1|CA830097
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|67022742|gb|CO451491.1|CO451491
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|211304675|gb|FL135313.1|FL135313
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|78120927|gb|DV539311.1|DV539311
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: CCCGACCCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|211036240|gb|FL120750.1|FL120750
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: CCGACGCCGGGATGGACGCCGTC-AGCGG-GGCTTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|154130466|gb|EC872180.2|EC872180
genomic: CCGACGCCGGGATGGACGCCGTCCAGCGGCGGCT-CATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|37421690|gb|CF648546.1|CF648546
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|21843201|gb|BQ703782.1|BQ703782
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTAEST: gi|211304672|gb|FL135310.1|FL135310
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
EST: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGA GTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
genomic: GCCGACGCCGGGATGGACGCCGTCCAGCGGCGGCTCATGTTTGAGGACGAgtgagttgcc ... ttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTA
ttccattttaaatcttgtgactgctgtcaataaaacaggttttttttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTATAACT
ttttttttctatgc CT-rich tract
ttttttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaccatataggtgaactgcaagacatgatcccagtttgttcgcttccattttaaatcttgtgactgctgtcaataaaacaggttttttttctatgcagGTGCATTTTAGTGGATGAACAAGACAATGTCATCGGCCACGAGTCCAAGTATAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA